Capstone — Plant Genomics Pipeline

Tie everything from Phases 1–3 together. One polished end-to-end pipeline on public plant data — Snakemake, DESeq2, Docker, Jupyter notebook, full README with workflow diagram. Tag a v1.0 release on GitHub.

Weeks 29–30Timeline

~21 hrsStudy time

FREEAlways

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What you'll learn

Topics covered in this module

Snakemake pipeline

DESeq2 report

Docker container

Jupyter notebook

v1.0 GitHub release

📋 Not sure where this fits? Module 23 is part of the full bioinformatics curriculum — a structured 42-week learning path from Bash to single-cell RNA-seq.

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Lessons are on their way.

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Module 23 of 31