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Phase 4 — Single-cell RNA-seq
Module 27

Scanpy — Core Workflow

Scanpy is the Python equivalent of Seurat and is increasingly preferred for large datasets. Reproduce the exact same PBMC analysis in Python — having both Seurat and Scanpy versions shows bilingual competence that few candidates demonstrate.

Weeks 35–36Timeline
~14 hrsStudy time
FREEAlways
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What you'll learn

Topics covered in this module

AnnData
sc.pp.normalize_total
PCA · UMAP
Leiden clustering
rank_genes_groups
.h5ad export

📋 Not sure where this fits? Module 27 is part of the full bioinformatics curriculum — a structured 42-week learning path from Bash to single-cell RNA-seq.

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Module 27 of 31