Phase 2 — Core Bioinformatics
Module 09

Variant Calling

Call SNPs and indels from sequencing data — the foundation of GWAS, population genomics, and precision medicine. Follow GATK best practices, understand VCF format, and filter variants correctly.

Weeks 13–14Timeline
~14 hrsStudy time
FREEAlways
What you'll learn

Topics covered in this module

GATK
HaplotypeCaller
VCF format
BCFtools
BQSR
SnpEff

📋 Not sure where this fits? Module 09 is part of the full bioinformatics curriculum — a structured 42-week learning path from Bash to single-cell RNA-seq.

See full curriculum →

Lessons are on their way.

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09
Module 09 of 31